Applicative toolboxes¶
“Builtin” toolboxes, shipped with the main BrainVISA distribution¶
| Name and URL | Author or Lab | BV versions | Systems | Short desription | |
|---|---|---|---|---|---|
| Morphologist toolbox | LNAO, CEA | all | all | T1 MRI segmentation, cortical sulci recognition and morphometry toolbox | |
| Cortical surface toolbox | LSIS, CNRS | 3.1 or > | all | Cortical surface parameterization and analysis | |
| BrainRAT toolbox | BioPICSEL, MIRCEN, CEA | 3.1 or > | all | Ex vivo 3D reconstruction and analysis | |
|
Freesurfer toolbox | LNAO, CEA | 4.2 or > | all | Link between Morphologist toolbox and FreeSurfer software. |
| Anatomist | LNAO, CEA | all | all | Interactive 3D visualization | |
|
SnapBase | NeuroSpin / CATI | all | All | Snapshots and posters renderings for large databases, based on Anatomist, designed to ease quality check. |
|
DataMind | NeuroSpin | all | All | Statistical analysis and data mining toolbox |
|
HighRes Cortex | NeuroSpin | all | All | Analysis of the laminar structure of the cortex in high resolution MRI |
| Primatologist | BioPICSEL, MIRCEN, CEA | all | All | Segmentation toolbox dedicated to primate brain images |
External toolboxes, distributed by other labs¶
| Name and URL | Author or Lab | BV versions | Systems | Short desription | |
|---|---|---|---|---|---|
|
RIC | Peter Kochunov | all | Linux | Cortical thickness maps, gyrification index, sulcal length and depth, NIFTI and NEMA formats converters... |
|
Vobi One | INT, CNRS | currently tested only with 4.3 | Linux | Data processing for functional optical imaging |
| IntrAnat | Grenoble Institute of Neuroscience | 4.3, 4.5 | Linux | IntrAnat is a collection of software to manage, analyse and anatomical (MRI, CT) and functional SEEG data (Intracranial electrodes) of epileptic patients. |
Former, unmaintained toolboxes¶
| Name and URL | Author or Lab | BV versions | Systems | Short desription | |
|---|---|---|---|---|---|
| MEEG toolbox | MEG Center, LENA | <= 3.0.x currently unmaintained | Linux | MEG and EEG processing | |
|
fMRI toolbox | INRIA Parietal, LNAO, CEA | 4.0 currently unmaintained | Linux | fMRI analysis toolbox, using SPM or FSL for preprocessings and its own statistical analysis routines |
| Connectomist-1 | CEA, NeuroSpin | <= 4.5.x removed | All | Diffusion MRI processing |